This project is a continuation of a R01 research grant titled “Systems Analysis of Social Pathways of Epidemics to Reduce Health Disparities”, which developed computational models to study social pathways that strongly affected transmission dynamics of infectious disease epidemics. This work uniquely combines (1) agent-based models and diverse kinds of datasets from public and commercial sources, including immunization and incidence data, (2) new machine learning techniques for identifying clusters of concern through network scan statistics and social media analysis, along with Bayesian methods to incorporate uncertainty, (3) novel methods for formalizing criticality and finding a ranking of clusters based on their criticality, which would apply to many other infectious diseases where compliance is a challenge, and (4) high performance computing techniques to scale for populations with one hundred million agents.
Detection and Characterization of Critical Under-Immunized Hotspots 2.0
National Institutes of Health (NIH)
The emergence of undervaccinated geographical clusters for diseases like measles has become a national concern. Several measles outbreaks have occurred in recent months, despite high Measles, Mumps, and Rubella (MMR) coverage in the United States (95%). Such undervaccinated clusters can act as reservoirs for infection that can transmit the disease to a broader population, magnifying their importance far beyond what their absolute numbers might indicate. The existence and growth of such undervaccinated clusters is often known to public health agencies and health provider networks. However, these agencies typically do not have enough resources to target people in each such cluster to attempt to improve the vaccination rate. Preliminary results show that not all undervaccinated clusters are “equal” in terms of their potential for causing a significant outbreak, referred to as its “criticality,” and the rate of undervaccination in a cluster does not necessarily correlate with its criticality. Still, there are no existing methods to estimate the potential risk of such clusters and to identify the most “critical” ones. Some of the key reasons are: (i) purely data-driven spatial statistics methods rely only on immunization coverage, which does not give any indication of the risk of an outbreak, and (ii) current causal epidemic models need to be combined with detailed incidence data, which has not been readily available. This proposal combines a systems science approach, combining agent-based stochastic epidemic models and techniques from machine learning, high performance computing, data mining, and spatial statistics, along with novel public and private datasets on immunization and incidence. These will be utilized to develop a novel methodology for identifying critical clusters, through the following tasks: (i) Identify spatial clusters with significantly low immunization rates or strong anti-vaccine sentiment, (ii) Develop an agent-based model for the spread of measles that incorporates detailed immunization data, and is calibrated using a novel source of incidence data, (iii) Develop methods to find and characterize critical spatial clusters, with respect to different metrics, which would capture both epidemic and economic burden, and order underimmunized clusters based on their criticality, and (iv) Use the methodology to evaluate interventions in terms of their effect on criticality. A highly interdisciplinary team involving two universities, a healthcare delivery organization, and a state Department of Health will work together to develop this methodology. Characterization of such clusters will enable public health departments and policymakers to enact targeted surveillance of their regions and more efficient allocation of resources.