Network Systems Science and Advanced Computing

Przemyslaw (Przemek) Porebski

  • Research Scientist
Przemyslaw Porebski headshot
Bio

Bio

Przemek Porebski is a research scientist in the Network Systems Science and Advanced Computing division. Before joining the Biocomplexity Institute at University of Virginia in 2020, he finalized the postdoctoral appointment at University of Virginia School of Medicine where he developed software and algorithms for structural biology.  

As a software developer, structural biologist and bioinformatician he contributed to diverse biomedical research fields such as antibiotic resistance, enzymology, cancer development, allergy and blood physiology. Among others he developed Molstack – a web-based platform for sharing and visualizing macromolecular models and experimental electron density and cryo-EM maps, CheckMyBlob  – a machine learning solution for the recognition and interpretation of electron density fragments and proteindiffraction.org - publicly available repository for raw experimental data for protein crystallography. 

  • Software development, interactive data visualization, data mining, data management 

  • Jagiellonian University, Krakow, Poland; Biotechnology, Structural Biology and Bioinformatics, M.S. 2009  

    Jagiellonian University, Krakow, Poland; Structural Biology and Bioinformatics, Ph.D. 2014  

    University of Virginia, Charlottesville, VA; Structural Biology, Postdoctoral 2015 

    Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Krakow, Poland; Biocatalysis, Postdoctoral 2017  

    University of Virginia, Charlottesville, VA; Structural Biology, Data Science, Postdoctoral 2020  

Selected Publications
Network Systems Science and Advanced Computing
Protein Sci, 29(1):120-127.: (2020) Porebski PJ, Bokota G, Venkataramany BS, Minor W.
Network Systems Science and Advanced Computing
Bioinformatics, 35(3):452-461.: (2019) Kowiel M, Brzezinski D, Porebski PJ, Shabalin IG, Jaskolski M, Minor W.
Network Systems Science and Advanced Computing
Acta Crystallogr D Struct Biol, 72(Pt 2):266-280.: (2016) Porebski PJ, Cymborowski M, Pasenkiewicz-Gierula M, Minor W.