Mathematical Biocomplexity
Mathematical Biocomplexity

Publications

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Our Scholarly Work

Search our numerous publications, which reflect our research expertise and scholarly work. Publications are searchable by topic area or keyword, such as an author’s last name, publication, year, etc.

All Publications

Mathematical Biocomplexity
Preprint/Prospective Article

Variation of the local topological structure of graph embeddings

Chen R; Reidys C . arXiv preprint arXiv:1503.01499. arxiv.org. 2015;
Mathematical Biocomplexity
Book

Combinatorics of Shapes, Topological RNA Structures and RNA-RNA Interactions: A Thesis Submitted for the Degree of Doctor of Philosophy

Li, T . University of Southern Denmark, Department of Mathematics and Computer Science. 2014; :126
Mathematical Biocomplexity
Article

Combinatorics of γ-structures

Han H; Li T; Reidys C . Journal of Computational Biology. Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA. 2014; 21(8):591-608
Mathematical Biocomplexity
Preprint/Prospective Article

A combinatorial interpretation of the κ⋆ g (n) coefficients

Li T; Reidys C . arXiv preprint arXiv:1406.3162. arXiv.org. 2014;
Mathematical Biocomplexity
Preprint/Prospective Article

Narayana polynomials and some generalizations

Chen R; Reidys C . arXiv preprint arXiv:1411.2530. arxiv.org. 2014;
Mathematical Biocomplexity
Preprint/Prospective Article

On plane permutations

Chen R; Reidys C . arXiv preprint arXiv:1411.5552. arxiv.org. 2014;
Mathematical Biocomplexity
Article

Shapes of interacting RNA complexes

Fu B; Reidys C . Journal of Computational Biology. liebertpub.com. 2014; 21(9):649-664
Mathematical Biocomplexity
Article

The evolution of the random reversal graph

Reidys C; Jin E . Applied Mathematics and Computation. Elsevier. 2014; 227:347-358
Mathematical Biocomplexity
Research Paper

A Topological Approach to Distances Between Permutations

Bura A . Syddansk Universitet. 2014;
Mathematical Biocomplexity
Preprint/Prospective Article

A bijection between unicellular and bicellular maps

Han H; Reidys C . arXiv preprint arXiv:1301.7177. arxiv.org. 2013;
Mathematical Biocomplexity
Article

A Bijection for Tricellular Maps

Han H; Reidys C . International Scholarly Research Notices. Hindawi Publishing Corporation. 2013;
Mathematical Biocomplexity
Article

Enumeration of RNA complexes via random matrix theory

Andersen J; Chekhov L; Penner R; Reidys C; Sulkowski P . Biochemical Society Transactions. portlandpress.com. 2013; 41(2):652-655
Mathematical Biocomplexity
Article

Generation of RNA pseudoknot structures with topological genus filtration

Huang F; Nebel M; Reidys C . Mathematical biosciences. Elsevier. 2013; 245(2):216-225
Mathematical Biocomplexity
Preprint/Prospective Article

On the genus filtration of diagrams over two backbones

Fu B; Reidys C . arXiv. arxiv.org. 2013;
Mathematical Biocomplexity
Article

The topological filtration of γ-structures

Li, T; Reidys C . Mathematical biosciences. Elsevier. 2013; 241(1):24-33
Mathematical Biocomplexity
Article

Topological recursion for chord diagrams, RNA complexes, and cells in moduli spaces

Andersen J; Chekhov L; Penner R; Reidys C; Sulkowski P . Nuclear Physics B. Elsevier. 2013; 866(3):414-443
Mathematical Biocomplexity
Article

Topological classification and enumeration of RNA structures by genus

Andersen J; Penner R; Reidys C; Waterman M . Journal of Mathematical Biology. Springer. 2013; 67:1261-1278
Mathematical Biocomplexity
Article

On topological RNA interaction structures

Qin J; Reidys C . Journal of Computational Biology. liebertpub.com. 2013;
Mathematical Biocomplexity
Preprint/Prospective Article

Uniform generation of RNA-RNA interaction structures of fixed topological genus

Fu B; Han H; Reidys C . arXiv. arxiv.org. 2013;
Mathematical Biocomplexity
Preprint/Prospective Article

Uniform generation of RNA pseudoknot structures with genus filtration

Huang F; Nebel M; Reidys C . arXiv preprint arXiv:1304.7397. arxiv.org. 2013;
Mathematical Biocomplexity
Article

Combinatorics of RNA–RNA interaction

Li T; Reidys C . Journal of mathematical biology. Springer. 2012; 64(3):529-556
Mathematical Biocomplexity
Article

A phase transition in energy-filtered RNA secondary structures

Han H; Reidys C . Journal of Computational Biology. liebertpub.com. 2012;
Mathematical Biocomplexity
Article

Symmetric circular matchings and RNA folding

Hofacker I; Reidys C; Stadler P . Discrete mathematics. Elsevier. 2012; 312(1):100-112
Mathematical Biocomplexity
Article

The 5'-3' distance of RNA secondary structures

Han H; Reidys C . Journal of Computational Biology. liebertpub.com. 2012;
Mathematical Biocomplexity
Article

On the combinatorics of sparsification

Huang F; Reidys C . Algorithms for Molecular Biology. Springer. 2012;