Mathematical Biocomplexity
Mathematical Biocomplexity

Publications

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Our Scholarly Work

Search our numerous publications, which reflect our research expertise and scholarly work. Publications are searchable by topic area or keyword, such as an author’s last name, publication, year, etc.

All Publications

Mathematical Biocomplexity
Software/Dashboard

Dual tree

He Q 2023;
Mathematical Biocomplexity
Software/Dashboard

Plasmid AMR-MGE complex detector

Li T 2023;
Mathematical Biocomplexity
Software/Dashboard

Plasmid k-mer pipeline

He Q 2023;
Mathematical Biocomplexity
Preprint/Prospective Article

BUYING TIME: DETECTING VOCS IN SARS-COV-2 VIA CO-EVOLUTIONARY SIGNALS

Barrett C; Bura A; He Q; Huang F; Li T; Reidys C 2022;
Mathematical Biocomplexity
Preprint/Prospective Article

A computational framework for weighted simplicial homology

Bura A; Dutta N; Li T; Reidys C . arXiv preprint arXiv:2206.04612. arxiv.org. 2022;
Executive Leadership | Mathematical Biocomplexity | Network Systems Science and Advanced Computing | Research and Business Operations | Social and Decision Analytics
Report

Explorations in Connection: 2021-2022 Annual Report

Barrett C; Coble L; Shipp S; Marathe M; Reidys C; Passarello K; Doyle L; Mathematical Biocomplexity Division; Network Systems Science and Advanced Computing Division; Social and Decision Analytics Division . Biocomplexity Institute, University of Virginia. 2022;
Mathematical Biocomplexity
Article

Loop homology of bi-secondary structures II

Bura A; He Q; Reidys C . Journal of Algebraic Combinatorics. Spinger. 2022;
Mathematical Biocomplexity
Preprint/Prospective Article

Rapid threat detection in SARS-CoV-2

Barrett C; Huang F; Li T; Warren A; Reidys C . medRxiv. medRxiv . 2022;
Mathematical Biocomplexity
Presentation

Robustness Analysis of Evolutionary Signals

Li T . Virginia Department of Health (VDH) SARS-CoV-2 Genetic Data Meeting. 2022;
Mathematical Biocomplexity
Preprint/Prospective Article

The arithmetic topology of genetic alignments

Barrett C; Bura A; He Q; Huang F; Reidys C . arXiv. 2022;
Mathematical Biocomplexity
Article

tRForest: a novel random forest-based algorithm for tRNA-derived fragment target prediction

Parikh R; Wilson B; Marrah L; Su Z; Saha S; Kumar P; Huang F; Dutta A . NAR Genomics and Bioinformatics. 2022; 4(2):lqac037
Mathematical Biocomplexity
Preprint/Prospective Article

On Weighted Simplicial Homology

Li T; Reidys C . arXiv preprint arXiv:2205.03435. arxiv.org. 2022;
Mathematical Biocomplexity
Software/Dashboard

Weighted Simplicial Homology

Dutta N; Bura A; Li T; Reidys C 2022;
Mathematical Biocomplexity
Article

Loop homology of bi-secondary structures

Bura A; He Q; Reidys C . Discrete Mathematics. 2021; 344(6)
Mathematical Biocomplexity
Article

Snord116 Post-transcriptionally Increases Nhlh2 mRNA Stability: Implications for Human Prader-Willi Syndrome

Kocher M; Huang F; Le E; Good D . Human Molecular Genetics. Oxford University Press. 2021; 30(12):1101-1110
Mathematical Biocomplexity
Article

On the Loop Homology of a Certain Complex of RNA Structures

Li T; Reidys C . Mathematics. Multidisciplinary Digital Publishing Institute. 2021; 9(15):1749
Mathematical Biocomplexity
Article

Weighted Homology of Bi-Structures over Certain Discrete Valuation Rings

Bura A; He Q; Reidys C . Mathematics. Multidisciplinary Digital Publishing Institute. 2021; 9(7):744
Mathematical Biocomplexity
Article

On an enhancement of RNA probing data using information theory

Li T; Reidys C . Algorithms for Molecular Biology. Springer. 2020; 15(1):44218
Mathematical Biocomplexity
Article

A Boltzmann Sampler for 1-Pairs with Double Filtration

Barrett C; He Q; Huang W; Reidys C . Journal of Computational Biology. Mary Ann Liebert, Inc.. 2019; 26(3):173-192
Mathematical Biocomplexity
Article

D-chain tomography of networks: a new structure spectrum and an application to the SIR process

Chen R; Bura A; Reidys C . SIAM Journal on Applied Dynamical …. SIAM. 2019; 18(4):2181–2201
Mathematical Biocomplexity
Preprint/Prospective Article

Dependence of update schedules of monotone sequential Boolean networks

Chen R; Mortveit H; Reidys C . researchgate.net. 2019;
Mathematical Biocomplexity
Thesis

Mathematical frameworks for quantitative network analysis

Bura A . vtechworks.lib.vt.edu. 2019;
Mathematical Biocomplexity
Software/Dashboard

RNA Structure Identifier

Li T; Reidys C 2019;
Mathematical Biocomplexity
Article

Small Gröbner fans of ideals of points

Dimitrova E; He Q; Robbiano L; Stigler B . Journal of Algebra and Its Applications. World Scientific Publishing Company. 2019; 19(5):2050087
Mathematical Biocomplexity
Preprint/Prospective Article

The energy-spectrum of bicompatible sequences

Huang F; Barrett C; Reidys C . arXiv preprint arXiv:1910.00190. Cornell University. 2019;