Mathematical Biocomplexity
Mathematical Biocomplexity

Publications

Divisions

Our Scholarly Work

Search our numerous publications, which reflect our research expertise and scholarly work. Publications are searchable by topic area or keyword, such as an author’s last name, publication, year, etc.

All Publications

Mathematical Biocomplexity
Article

Topology of RNA-RNA interaction structures

Andersen J; Huang F; Penner R; Reidys C . Journal of Computational Biology. Mary Ann Liebert, Inc. . 2012; 19(7):928-943
Mathematical Biocomplexity
Article

Addendum: topology and prediction of RNA pseudoknots

Reidys C; Huang F; Penner R; Stadler P; Nebel M; Andersen J . Bioinformatics. Oxford University Press. 2011; 28(2):300-300
Mathematical Biocomplexity
Part of Book

Combinatorial analysis

Reidys C . Combinatorial Computational Biology of RNA. Springer. 2011; :85-142
Mathematical Biocomplexity
Article

Combinatorial analysis of interacting RNA molecules

Li T; Reidys C . Mathematical biosciences. Elsevier. 2011; 233(1):47-58
Mathematical Biocomplexity
Part of Book

Folding

Reidys C . Combinatorial Computational Biology of RNA. Springer. 2011; :187-212
Mathematical Biocomplexity
Article

Loops in canonical RNA pseudoknot structures

Nebel M; Reidys C; Wang R . Journal of Computational …. Mary Ann Liebert, Inc. . 2011; 18(12):1793-1806
Mathematical Biocomplexity
Part of Book

Neutral networks

Reidys C . Combinatorial Computational Biology of RNA. Springer. 2011; :213-243
Mathematical Biocomplexity
Part of Book

Probabilistic Analysis

Reidys C . Combinatorial Computational Biology of RNA. Springer. 2011; :143-186
Mathematical Biocomplexity
Article

Random induced subgraphs of Cayley graphs induced by transpositions

Jin E; Reidys C . Discrete mathematics. Elsevier. 2011; 311(21):2496-2511
Mathematical Biocomplexity
Article

RNA–RNA interaction prediction based on multiple sequence alignments

Li A; Marz M; Qin J; Reidys C . Bioinformatics. Oxford Univ Press. 2011; 27(4):456-463
Mathematical Biocomplexity
Part of Book

Tangled diagrams

Reidys C . Combinatorial Computational Biology of RNA. Springer. 2011; :67-83
Mathematical Biocomplexity
Article

Topology and prediction of RNA pseudoknots

Reidys C; Huang F; Penner R; Stadler P; Nebel M; Andersen J . Bioinformatics. Oxford University Press. 2011; 27(8):1076-1085
Mathematical Biocomplexity
Article

Canonical RNA Pseudoknot Structures with Arc Length >4

Reidys C; Wang R; Zhao Y 2010;
Mathematical Biocomplexity
Book

Combinatorial Computational Biology of RNA: Pseudoknots and Neutral Networks

Reidys C . Springer. 2010;
Mathematical Biocomplexity
Article

Inverse folding of RNA pseudoknot structures

Gao J; Li L; Reidys C . Algorithms for Molecular Biology. Springer. 2010; 5
Mathematical Biocomplexity
Article

Irreducibility in RNA structures

Jin E; Reidys C . Bulletin of mathematical biology. Springer. 2010; 72:375-399
Mathematical Biocomplexity
Preprint/Prospective Article

Linear chord diagrams on two intervals

Andersen J; Penner R; Reidys C; Wang R . arXiv preprint arXiv …. arxiv.org. 2010;
Mathematical Biocomplexity
Preprint/Prospective Article

Modular, k-noncrossing diagrams

Reidys C; Wang R; Zhao Y . arXiv preprint arXiv:1003.2710. arxiv.org. 2010;
Mathematical Biocomplexity
Article

RNA pseudoknot structures with arc-length≥ 3 and stack-length≥ σ

Jin E; Reidys C . Discrete applied mathematics. Elsevier. 2010; 158(1):25-36
Mathematical Biocomplexity
Article

Shapes of RNA pseudoknot structures

Reidys C; Wang R . Journal of Computational Biology. liebertpub.com. 2010; 17(11):1575-1590
Mathematical Biocomplexity
Research Paper

Target prediction and a statistical sampling algorithm for RNA-RNA interaction

Huang FW; Qin J; Reidys CM; Stadler PF . Bioinformatics. 2010; 26(2):175-181
Mathematical Biocomplexity
Article

Target prediction and a statistical sampling algorithm for RNA–RNA interaction

Huang F; Qin J; Reidys C; Stadler P . Bioinformatics. academic.oup.com. 2010; 26(2):175-181
Mathematical Biocomplexity
Article

On the decomposition of k-noncrossing RNA structures

Jin E; Reidys C . Advances in Applied Mathematics. Elsevier. 2010; 44(1):53-70
Mathematical Biocomplexity
Preprint/Prospective Article

The evolution of random reversal graph

Jin E; Reidys C . arXiv preprint arXiv:1003.0739. arxiv.org. 2010;
Mathematical Biocomplexity
Article

On the uniform generation of modular diagrams

Huang F; Reidys C . the electronic journal of combinatorics. 2010; 17(1):175